2024

Taylor, P. A.; Ge, T.; O’Connor, T. C.; Grest, G. S. Probing Nanorod Assembly and Dynamics in Polymer Nanocomposites under Equilibrium and Shear Flow Conditions. [In Preparation]

Taylor, P. A.; Wang, J.; Ge, T.; O’Connor, T. C.; Grest, G. S. Smoother Surfaces Enhance Diffusion of Nanorods in Entangled Polymer Melts. Macromolecules 2024, 57 (5), 2482–2489.

Parihar, K.; Ko, S.-H. B.; Bradley, R. P.; Taylor, P.; Ramakrishnan, N.; Baumgart, T.; Guo, W.; Weaver, V. M.; Janmey, P. A.; Radhakrishnan, R. Asymmetric crowders and membrane morphology at the nexus of intracellular trafficking and oncology. Mechanobiology in Medicine 2024, 2 (3), 100071. https://doi.org/10.1016/j.mbm.2024.100071.

Parihar, K.; Ko, S.-H.; Bradley, R.; Taylor, P.; Ramakrishnan, N.; Baumgart, T.; Guo, W.; Weaver, V. M.; Janmey, P. A.; Radhakrishnan, R. Free Energy Calculations for Membrane Morphological Transformations and Insights to Physical Biology and Oncology. Methods in Enzymology 2024. DOI:10.1016/bs.mie.2024.03.028.

2023

Taylor, P. A.; Stevens, M. J. Explicit Solvent Machine-Learned Coarse-Grained Model of Sodium Polystyrene Sulfonate to Capture Polymer Structure and Dynamics. The European Physical Journal E 2023, 46 (10). DOI:10.1140/epje/s10189-023-00355-x.

Thede, A. T.; Tang, J. D.; Cocker, C. E.; Harold, L. J.; Amelung, C. D.; Kittel, A. R.; Taylor, P. A.; Lampe, K. J. Effects of Cell-Adhesive Ligand Presentation on Pentapeptide Supramolecular Assembly and Gelation: Simulations and Experiments. Cells Tissues Organs 2023, 1–16. DOI:10.1159/000534280.

Taylor, P.; Kronenberger, S.; Kloxin, A.; Jayaraman, A. Effects of Solvent Conditions on the Self-Assembly of Heterotrimeric Collagen-like Peptide (CLP) Triple Helices: A Coarse-Grained Simulation Study. Soft Matter 2023, 19 (26), 4939–4953. DOI:10.1039/d3sm00374d.

2022

Taylor, P. A.; Kloxin, A. M.; Jayaraman, A. Impact of Collagen-like Peptide (CLP) Heterotrimeric Triple Helix Design on Helical Thermal Stability and Hierarchical Assembly: A Coarse-Grained Molecular Dynamics Simulation Study. Soft Matter 2022, 18 (16), 3177–3192. DOI:10.1039/d2sm00087c.

2021

Jayaraman, A.; Kulshreshtha, A.; Taylor, P.; Prhashanna, A. Coarse-Grained Modeling and Simulations of Thermoresponsive Biopolymers and Polymer Nanocomposites with Specific and Directional Interactions. Foundations of Molecular Modeling and Simulation 2021, 37–74. DOI:10.1007/978-981-33-6639-8_3.

Hilderbrand, A. M.; Taylor, P. A.; Stanzione, F.; LaRue, M.; Guo, C.; Jayaraman, A.; Kloxin, A. M. Combining Simulations and Experiments for the Molecular Engineering of Multifunctional Collagen Mimetic Peptide-Based Materials. Soft Matter 2021, 17 (7), 1985–1998. DOI:10.1039/d0sm01562h.

2020

Taylor, P. A.; Jayaraman, A. Molecular Modeling and Simulations of Peptide–Polymer Conjugates. Annual Review of Chemical and Biomolecular Engineering 2020, 11 (1), 257–276. DOI:10.1146/annurev-chembioeng-092319-083243.

Taylor, P. A.; Huang, H.; Kiick, K. L.; Jayaraman, A. Placement of Tyrosine Residues as a Design Element for Tuning the Phase Transition of Elastin-Peptide-Containing Conjugates: Experiments and Simulations. Molecular Systems Design & Engineering 2020, 5 (7), 1239–1254. DOI:10.1039/d0me00051e.

2019

Prhashanna, A.; Taylor, P. A.; Qin, J.; Kiick, K. L.; Jayaraman, A. Effect of Peptide Sequence on the LCST-like Transition of Elastin-like Peptides and Elastin-like Peptide–Collagen-like Peptide Conjugates: Simulations and Experiments. Biomacromolecules 2019, 20 (3), 1178–1189. DOI:10.1021/acs.biomac.8b01503.